| Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma N van Rooij, MM van Buuren, D Philips, A Velds, M Toebes, B Heemskerk, ... Journal of Clinical Oncology 31 (32), e439-e442, 2013 | 947 | 2013 |
| Properties of MHC class I presented peptides that enhance immunogenicity JJA Calis, M Maybeno, JA Greenbaum, D Weiskopf, AD De Silva, A Sette, ... PLoS computational biology 9 (10), e1003266, 2013 | 780 | 2013 |
| Evolutionary and immunological implications of contemporary HIV-1 variation B Korber, B Gaschen, K Yusim, R Thakallapally, C Kesmir, V Detours British medical bulletin 58 (1), 19-42, 2001 | 769 | 2001 |
| The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage M Nielsen, C Lundegaard, O Lund, C Keşmir Immunogenetics 57, 33-41, 2005 | 577 | 2005 |
| Prediction of human protein function from post-translational modifications and localization features LJ Jensen, R Gupta, N Blom, D Devos, J Tamames, C Kesmir, H Nielsen, ... Journal of molecular biology 319 (5), 1257-1265, 2002 | 464 | 2002 |
| Sensitive quantitative predictions of peptide‐MHC binding by a ‘Query by Committee’artificial neural network approach S Buus, SL Lauemøller, P Worning, C Kesmir, T Frimurer, S Corbet, ... Tissue antigens 62 (5), 378-384, 2003 | 431 | 2003 |
| VDJdb: a curated database of T-cell receptor sequences with known antigen specificity M Shugay, DV Bagaev, IV Zvyagin, RM Vroomans, JC Crawford, G Dolton, ... Nucleic acids research 46 (D1), D419-D427, 2018 | 414 | 2018 |
| Prediction of proteasome cleavage motifs by neural networks C Keşmir, AK Nussbaum, H Schild, V Detours, S Brunak Protein engineering 15 (4), 287-296, 2002 | 370 | 2002 |
| Definition of supertypes for HLA molecules using clustering of specificity matrices O Lund, M Nielsen, C Kesmir, AG Petersen, C Lundegaard, P Worning, ... Immunogenetics 55, 797-810, 2004 | 348 | 2004 |
| Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation K Yusim, C Kesmir, B Gaschen, MM Addo, M Altfeld, S Brunak, A Chigaev, ... Journal of virology 76 (17), 8757-8768, 2002 | 315 | 2002 |
| VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ... Nucleic Acids Research 48 (D1), D1057-D1062, 2020 | 312 | 2020 |
| MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage MC Gold, JE McLaren, JA Reistetter, S Smyk-Pearson, K Ladell, ... Journal of Experimental Medicine 211 (8), 1601-1610, 2014 | 211 | 2014 |
| Modeling the adaptive immune system: predictions and simulations C Lundegaard, O Lund, C Keşmir, S Brunak, M Nielsen Bioinformatics 23 (24), 3265-3275, 2007 | 166 | 2007 |
| Biomarkers in cancer immunotherapy TN Schumacher, C Kesmir, MM van Buuren Cancer cell 27 (1), 12-14, 2015 | 160 | 2015 |
| Systemic inflammation in childhood obesity: circulating inflammatory mediators and activated CD14++ monocytes HS Schipper, R Nuboer, S Prop, HJ Van Den Ham, FK De Boer, C Kesmir, ... Diabetologia 55, 2800-2810, 2012 | 153 | 2012 |
| Immunological bioinformatics O Lund, M Nielsen, C Lundegaard, C Kesmir, S Brunak MIT press, 2005 | 143 | 2005 |
| HLA alleles associated with slow progression to AIDS truly prefer to present HIV-1 p24 JAM Borghans, A Mølgaard, RJ de Boer, C Keşmir PLoS One 2 (9), e920, 2007 | 133 | 2007 |
| The evolution of natural killer cell receptors P Carrillo-Bustamante, C Keşmir, RJ de Boer Immunogenetics 68, 3-18, 2016 | 126 | 2016 |
| Amino acid similarity accounts for T cell cross-reactivity and for “holes” in the T cell repertoire S Frankild, RJ De Boer, O Lund, M Nielsen, C Kesmir PloS one 3 (3), e1831, 2008 | 119 | 2008 |
| Diversity of human αβ T cell receptors C Kesmir, JAM Borghans, RJ de Boer Science 288 (5469), 1135-1135, 2000 | 119 | 2000 |
Rob J de BoerUtrecht UniversityVerified email at uu.nl
Rob J de BoerUtrecht UniversityVerified email at uu.nl